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H3ABioNet SOPs
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Organization
Genomic Analyses
Human variant calling
Genome Wide Association Studies
RNA Sequencing data analysis
16S Diversity analysis
Contributing
Technical Guide
Language & Style
Feedback
16S rRNA SOP 1.0
Introduction
General Introduction
Glossary of associated terms and jargon
Schematic analysis workflow
Phase I Preprocessing of reads
QC plots and stats
Trim and filter reads
Paired read stitching
Chimera detection
Phase II OTU picking, classification and phylogenetic tree generation
OTU picking
ASV prediction
Classification
Alignment
Phase III Measure diversity and other statistical analysis
Determine alpha diversity
Determine beta diversity
Other statistical analysis
H3ABioNet assessments
Practice dataset
Input data assessment questions
Operational assessment questions
Runtime analysis
Analysis of the results
Appendices
Additional notes
Tools & Databases
16s data processing and microbiome analysis
Edit me
H3ABioNet Assessment exercises
Bibliography
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genomics_analysis
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