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Operational assessment questions

  • At each step of the workflow, describe which software was used and why:
    • Was the choice affected by the nature and/or quality of the reads?
    • Was the choice made due to the time and cost of the analysis?
    • What are the accuracy and performance considerations for the chosen piece of software?
  • For each software, describe which input parameters were chosen, and why:
    • Was the choice affected by the nature and/or quality of the reads?
    • Did the available hardware play a role in the parameter choice?
    • How did the purpose of the study affect the parameter choice?
  • For each step of the workflow, how do you know that it completed successfully and that the results are usable for the next step?

Bibliography