Project tree
Below is a tree of key files and folders within this site that would need editing for adding new content. This is a simplistic tree to suggest where to place content, and is not meant to help with functional changes to the theme itself.
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├── _config.yml #Specific site configurations
├── index.md #Main landing page of the site
├── authors.yml #Contact details for authors- inactive now
├── README.md #Github readme file
├── template_frontmatter.md #Sample page frontmatter file
├── pages #Folder of site pages, arranged per the top navigation bar categories
│ ├── genomics_analysis
│ │ ├── 16s-rRNA
│ │ │ └── 16s-rRNA.md
│ │ └── Variant-Calling
│ │ └── Variant-Calling.md
│ └── tags #Folder of all tags in all pages
│ ├── tag_documentation.md
│ └── tag_genomics_analysis.md
├── _data
│ ├── sidebars #Folder of all sidebars in the site
│ │ ├── sops_sidebar.yml
│ │ └── varcall_sidebar.yml
│ ├── tags.yml #File of all tags present in the site
│ └── topnav.yml #File of top navigation contents
├── assets
│ └── images #Folder of images used within the site
│ └── VarCall.png
├── scripts #Various scripts to help with automation of tasks
│ └── split_by_h2.sh
├── _includes
│ └── custom
│ ├── usermap.html #Template file for simple workflow maps
│ └── usermapcomplex.html #Template file for complex maps
├── pdf
│ └── mydoc.pdf
├── pdfconfigs
│ ├── config_mydoc_pdf.yml
│ ├── prince-list.txt
│ ├── titlepage.html
│ └── tocpage.html
└── pdf-mydoc.sh
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